STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_06887Uncharacterized flavoprotein; COG0426. (255 aa)    
Predicted Functional Partners:
hemN1
Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; COG0635.
  
  
 0.637
hemN2
Oxygen-independent coproporphyrinogen III oxidase; TIGRFAMsMatches:TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.623
HCH_03590
Outer membrane protein W; COG3047.
   
    0.587
HCH_00447
DnaK suppressor protein; COG1734.
   
    0.578
HCH_03989
Uncharacterized conserved protein; COG4273.
   
  
 0.513
HCH_00777
NAD(P)H-nitrite reductase; COG1251; Belongs to the FAD-dependent oxidoreductase family.
  
  
 0.484
HCH_05820
NAD(P)H-nitrite reductase; COG1251; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.484
HCH_06886
NAD-dependent protein deacetylases, SIR2 family; COG0846.
       0.463
HCH_04312
Uncharacterized NAD(FAD)-dependent dehydrogenase; COG0446.
 
    0.425
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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