STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0003PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpd:Teth39_0506 ABC transporter related. (311 aa)    
Predicted Functional Partners:
Amuc_0004
KEGG: scl:sce2430 hypothetical protein.
 
 
 0.949
Amuc_1379
PFAM: ABC-2 type transporter; KEGG: rpc:RPC_3040 ABC-2.
  
 0.935
Amuc_1380
PFAM: ABC-2 type transporter; KEGG: rpc:RPC_3039 ABC-2.
  
 0.934
Amuc_0005
KEGG: csc:Csac_0364 hypothetical protein.
 
  
 0.884
Amuc_0408
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pcu:pc0014 probable ATP-binding component of ABC transporters.
 
     
0.803
Amuc_0403
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_1905 ABC transporter.
  
0.678
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
    0.485
Amuc_0006
KEGG: cyb:CYB_1660 lipoprotein, putative.
       0.475
Amuc_0007
PFAM: protein of unknown function DUF34; KEGG: dge:Dgeo_1982 protein of unknown function DUF34.
  
    0.446
Amuc_1992
KEGG: gur:Gura_2674 hypothetical protein.
  
 
 0.423
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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