STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0010Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpy:Cphy_3023 alpha-L-fucosidase. (538 aa)    
Predicted Functional Partners:
Amuc_0186
KEGG: pdi:BDI_2423 glycoside hydrolase family 95.
  
 
 0.981
Amuc_1120
KEGG: sus:Acid_5349 hypothetical protein.
  
 
  0.970
Amuc_0846
PFAM: coagulation factor 5/8 type domain protein; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: fjo:Fjoh_2028 alpha-L-fucosidase.
 
  
 
0.937
Amuc_0392
PFAM: coagulation factor 5/8 type domain protein; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: fjo:Fjoh_2028 alpha-L-fucosidase.
  
  
 
0.929
Amuc_0146
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: hau:Haur_0019 alpha-L-fucosidase.
  
  
 
0.927
Amuc_1686
Beta-galactosidase; PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: bth:BT_3654 beta-galactosidase precursor.
 
  
 0.797
Amuc_0771
Beta-galactosidase; PFAM: glycoside hydrolase family 35; KEGG: bvi:Bcep1808_1284 beta-galactosidase.
 
  
 0.794
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.694
Amuc_0009
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: rxy:Rxyl_1244 prephenate dehydratase.
 
   
 0.678
Amuc_1187
KEGG: bth:BT_3592 alpha-galactosidase precursor.
 
     0.653
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.