STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0055PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1257 ABC transporter related. (266 aa)    
Predicted Functional Partners:
Amuc_0056
PFAM: ABC-3 protein; KEGG: btl:BALH_2849 manganese ABC transporter, permease.
 
 0.998
Amuc_0053
PFAM: periplasmic solute binding protein; KEGG: csa:Csal_0220 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.995
Amuc_0054
Hypothetical protein.
       0.780
Amuc_0057
PFAM: UvrB/UvrC protein; KEGG: tte:TTE2329 hypothetical protein.
       0.576
Amuc_0058
PFAM: ATP:guanido phosphotransferase; KEGG: mta:Moth_0161 ATP:guanido phosphotransferase.
       0.576
Amuc_0486
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: aae:aq_1207 transcriptional regulator (FurR family); Belongs to the Fur family.
 
  
 0.561
Amuc_0059
PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pcu:pc1511 probable endopeptidase ATP-binding chain ClpC; Belongs to the ClpA/ClpB family.
     
 0.530
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.