STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0066KEGG: fps:FP1581 putative ATP/GTP-binding protein. (304 aa)    
Predicted Functional Partners:
Amuc_0068
TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cth:Cthe_2941 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
       0.531
Amuc_0069
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: art:Arth_0902 NAD-dependent epimerase/dehydratase.
       0.528
Amuc_0067
KEGG: dvl:Dvul_1367 GatB/YqeY domain protein.
       0.527
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.504
Amuc_1747
TIGRFAM: cytidyltransferase-related domain protein; PFAM: oxidoreductase domain protein; cytidylyltransferase; KEGG: msi:Msm_1514 glycerol-3-phosphate cytidyltransferase, TagD.
  
  
 0.435
Amuc_0017
Oxidoreductase domain protein; Glycosidase.
  
  
 0.412
Amuc_0920
Oxidoreductase domain protein; Glycosidase.
  
  
 0.412
Amuc_1216
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain protein.
  
  
 0.412
Amuc_2166
PFAM: oxidoreductase domain protein; KEGG: cpy:Cphy_0398 oxidoreductase domain protein.
  
  
 0.412
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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