STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0088KEGG: mms:mma_0637 hypothetical protein. (650 aa)    
Predicted Functional Partners:
Amuc_1541
PFAM: lipid A biosynthesis acyltransferase; KEGG: hha:Hhal_2316 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase.
  
  
 0.768
Amuc_2078
Capsular exopolysaccharide family; KEGG: bth:BT_0061 putative tyrosine-protein kinase ptk; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.733
Amuc_2077
PFAM: polysaccharide export protein; KEGG: pgi:PG0437 polysaccharide export protein, BexD/CtrA/VexA family.
  
  
 0.659
Amuc_2093
PFAM: glycosyl transferase family 2; KEGG: eli:ELI_12220 SpsA-like protein.
  
  
 0.607
Amuc_2088
PFAM: glycosyl transferase group 1; KEGG: fph:Fphi_1267 glycosyltransferase-like protein.
  
  
 0.577
Amuc_0087
Hypothetical protein.
       0.550
Amuc_2081
PFAM: glycosyl transferase family 2; KEGG: bfr:BF3648 putative glycosyltransferase.
  
  
 0.526
Amuc_1413
Capsular exopolysaccharide family; KEGG: noc:Noc_1497 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.463
Amuc_0968
KEGG: ade:Adeh_2766 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.441
Amuc_2080
PFAM: sugar transferase; KEGG: gfo:GFO_1988 exopolysaccharide production related sugar transferase.
  
  
 0.441
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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