STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0318PFAM: permease YjgP/YjgQ family protein; KEGG: gur:Gura_3734 permease YjgP/YjgQ family protein. (363 aa)    
Predicted Functional Partners:
Amuc_0679
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_4366 ABC transporter-related protein.
 
 
 0.995
Amuc_1510
PFAM: permease YjgP/YjgQ family protein; KEGG: gme:Gmet_1248 permease YjgP/YjgQ.
 
  
 
0.875
Amuc_1238
PFAM: MotA/TolQ/ExbB proton channel; KEGG: sru:SRU_1587 putative biopolymer transport protein.
  
     0.725
Amuc_0287
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein.
  
     0.638
Amuc_2052
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.592
Amuc_0317
Recombination protein O RecO; Involved in DNA repair and RecF pathway recombination.
 
    0.562
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.561
Amuc_1053
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sat:SYN_00921 outer membrane protein.
 
     0.559
Amuc_0311
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: sat:SYN_02215 signal transduction histidine kinase.
 
    0.551
Amuc_1239
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rba:RB12053 conserved hypothetical protein-putative export protein ExbD.
  
     0.547
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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