STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0358PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_0192 ABC transporter related. (210 aa)    
Predicted Functional Partners:
Amuc_0334
PFAM: protein of unknown function DUF214; KEGG: rba:RB11033 putative ABC transporter integral membrane protein.
  
 
 0.996
Amuc_0104
PFAM: protein of unknown function DUF214; KEGG: sfu:Sfum_2810 ABC transporter related.
 
 
 0.785
Amuc_0359
KEGG: pfa:PF11_0035 hypothetical protein.
       0.773
Amuc_0360
KEGG: cre:CHLREDRAFT_148820 hypothetical protein Pfam: TolA PROSITE: ALA_RICH GLY_RICH LYS_RICH.
       0.752
Amuc_1179
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3281 ABC transporter related.
  
     0.675
Amuc_0357
PFAM: protein of unknown function DUF214.
       0.651
rpsI
PFAM: ribosomal protein S9; KEGG: ooe:OEOE_0629 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
     0.579
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
 
     0.574
cysS
KEGG: pcu:pc1235 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.567
Amuc_1397
Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: ath:AT3G46100 ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase.
  
   
 0.567
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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