STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0361PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: pdi:BDI_1446 ABC-type multidrug transport system, ATPase component. (1194 aa)    
Predicted Functional Partners:
Amuc_1240
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sru:SRU_1584 tetratricopeptide repeat family.
  
     0.743
Amuc_1788
Hypothetical protein; KEGG: aba:Acid345_2716 serine/threonine protein kinase.
  
     0.709
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
     0.674
Amuc_1772
PFAM: Abortive infection protein; KEGG: gme:Gmet_2036 abortive infection protein.
 
     0.671
Amuc_2135
KEGG: bja:blr3607 hypothetical protein.
  
     0.655
Amuc_0078
Serine/threonine protein kinase; PFAM: protein of unknown function DUF323; PEGA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ilo:IL2186 secreted protein with uncharacterized domain.
 
     0.649
Amuc_1443
Hypothetical protein; KEGG: pca:Pcar_1302 predicted TPR domain protein.
 
     0.633
Amuc_1414
PFAM: polysaccharide export protein; KEGG: gfo:GFO_0539 polysaccharide export outer membrane protein.
  
  
 0.609
Amuc_2077
PFAM: polysaccharide export protein; KEGG: pgi:PG0437 polysaccharide export protein, BexD/CtrA/VexA family.
  
  
 0.609
Amuc_1992
KEGG: gur:Gura_2674 hypothetical protein.
  
     0.591
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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