STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0460Hypothetical protein. (173 aa)    
Predicted Functional Partners:
Amuc_0461
SMART: PDZ/DHR/GLGF domain protein; KEGG: pnu:Pnuc_0123 peptidase S1 and S6, chymotrypsin/Hap.
       0.773
Amuc_0459
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mxa:MXAN_6759 RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.516
Amuc_0462
Hypothetical protein.
       0.511
Amuc_0463
PFAM: flavoprotein; KEGG: deb:DehaBAV1_0406 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase.
       0.492
Amuc_0464
Hypothetical protein.
       0.459
Amuc_0458
PFAM: glutamine amidotransferase class-II; KEGG: gfo:GFO_3378 amidophosphoribosyltransferase.
       0.449
Amuc_0465
PFAM: Peptidase M23; KEGG: bld:BLi03767 hypothetical protein.
       0.424
Amuc_0466
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA1613 TPR-domain containing protein.
       0.424
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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