STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0465PFAM: Peptidase M23; KEGG: bld:BLi03767 hypothetical protein. (347 aa)    
Predicted Functional Partners:
Amuc_0466
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA1613 TPR-domain containing protein.
       0.773
Amuc_0464
Hypothetical protein.
       0.739
Amuc_0467
PFAM: NUDIX hydrolase; protein of unknown function DUF344; KEGG: har:HEAR3402 hypothetical protein.
       0.733
Amuc_0463
PFAM: flavoprotein; KEGG: deb:DehaBAV1_0406 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase.
       0.654
Amuc_1638
PFAM: TPR repeat-containing protein; type II and III secretion system protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: vfi:VF0359 general secretion pathway protein D; Belongs to the bacterial secretin family.
 
   
 0.632
Amuc_0462
Hypothetical protein.
       0.626
Amuc_1098
PFAM: TPR repeat-containing protein; type II and III secretion system protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rso:RSc3114 probable general secretory pathway D transmembrane protein; Belongs to the bacterial secretin family.
 
   
 0.617
Amuc_1518
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bth:BT_1616 hypothetical protein.
  
     0.595
Amuc_1443
Hypothetical protein; KEGG: pca:Pcar_1302 predicted TPR domain protein.
 
     0.564
Amuc_0253
PFAM: Peptidase M23; KEGG: lic:LIC12256 membrane metalloendopeptidase.
  
     0.557
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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