STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0482KEGG: hch:HCH_00659 hydrolase of the alpha/beta superfamily. (272 aa)    
Predicted Functional Partners:
Amuc_0481
Hypothetical protein.
       0.773
glaB
Glycosyl hydrolase family 98 putative carbohydrate binding module; Alpha-galactosidase. Removes both branched alpha-1,3-linked galactose residues of blood group B antigens and linear alpha-1,3- linked galactose structures; Belongs to the glycosyl hydrolase 110 family. B subfamily.
       0.567
Amuc_0982
KEGG: dol:Dole_2046 YD repeat protein.
  
     0.457
Amuc_1145
KEGG: dol:Dole_2046 YD repeat protein.
  
     0.427
Amuc_1143
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: dol:Dole_2050 YD repeat protein.
  
     0.411
Amuc_0735
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: dol:Dole_2050 YD repeat protein.
  
     0.402
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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