STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0685KEGG: sme:SMa0322 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Amuc_0684
Transcriptional regulator, HxlR family; PFAM: regulatory protein MarR; helix-turn-helix HxlR type; KEGG: cbe:Cbei_3620 transcriptional regulator, HxlR family.
       0.532
Amuc_0686
PFAM: ABC transporter related; KEGG: blo:BL1083 excinuclease ABC subunit A-like protein.
       0.504
Amuc_1314
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tde:TDE1721 radical SAM domain protein.
 
     0.497
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.