STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0731Hypothetical protein; KEGG: xau:Xaut_3803 glycosyl transferase group 1. (346 aa)    
Predicted Functional Partners:
Amuc_1158
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rba:RB9852 probable RNA polymerase sigma factor CnrH.
  
     0.734
Amuc_1565
PFAM: alpha-2-macroglobulin domain protein; KEGG: mxa:MXAN_2974 hypothetical protein.
  
    0.720
Amuc_0136
KEGG: rba:RB8999 conserved hypothetical protein-putative transmembrane protein.
  
     0.653
Amuc_1985
KEGG: rba:RB9002 hypothetical protein-transmembrane prediction.
  
   0.648
Amuc_0175
PFAM: PDZ/DHR/GLGF domain protein; KEGG: rba:RB2066 probable serine protease.
  
    0.556
Amuc_0563
Hypothetical protein; KEGG: fma:FMG_0555 type IV pilin PilA homolog.
  
    0.531
Amuc_2046
KEGG: rba:RB8202 hypothetical protein.
  
     0.520
Amuc_1438
PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: rba:RB11162 hypothetical protein-transmembrane prediction.
  
     0.502
Amuc_0135
TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: rba:RB8992 hypothetical protein-transmembrane prediction.
  
    0.500
Amuc_0623
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: cpf:CPF_1759 BNR/Asp-box repeat domain protein.
  
     0.466
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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