STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0757PFAM: glycosyl transferase family 2; KEGG: bsu:BSU34280 hypothetical protein. (384 aa)    
Predicted Functional Partners:
Amuc_1070
PFAM: glycosyl transferase family 2; KEGG: sat:SYN_01108 glycosyltransferase.
 
  
 0.774
Amuc_0632
PFAM: glycosyl transferase family 2; KEGG: tel:tlr1346 unknown protein.
  
     0.722
Amuc_0758
KEGG: dps:DP0018 hypothetical protein.
       0.682
Amuc_0754
PFAM: glycosyl transferase family 2; KEGG: msi:Msm_1310 glycosyltransferase, GT2 family.
 
    
0.545
Amuc_2081
PFAM: glycosyl transferase family 2; KEGG: bfr:BF3648 putative glycosyltransferase.
 
    
0.463
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
  
    0.420
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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