STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0803PFAM: coagulation factor 5/8 type domain protein; KEGG: pdi:BDI_2427 hypothetical protein. (712 aa)    
Predicted Functional Partners:
Amuc_0623
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: cpf:CPF_1759 BNR/Asp-box repeat domain protein.
 
     0.850
Amuc_1835
Exo-alpha-sialidase; KEGG: pdi:BDI_2946 glycoside hydrolase family 33, candidate sialidase.
 
  
 0.777
glaB
Glycosyl hydrolase family 98 putative carbohydrate binding module; Alpha-galactosidase. Removes both branched alpha-1,3-linked galactose residues of blood group B antigens and linear alpha-1,3- linked galactose structures; Belongs to the glycosyl hydrolase 110 family. B subfamily.
 
     0.763
glaA
Hypothetical protein; Alpha-galactosidase that specifically removes branched alpha- 1,3-linked galactose residues present in blood group B antigens. Has no activity toward linear alpha-1,3-linked galactose residues (By similarity).
 
     0.748
Amuc_0455
PFAM: lipolytic protein G-D-S-L family; KEGG: pdi:BDI_2948 sialate O-acetylesterase.
  
     0.693
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.625
Amuc_0625
Exo-alpha-sialidase; KEGG: rba:RB3353 sialidase [precursor].
 
  
 0.598
Amuc_0607
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bfr:BF4354 hypothetical protein.
  
     0.593
Amuc_0846
PFAM: coagulation factor 5/8 type domain protein; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: fjo:Fjoh_2028 alpha-L-fucosidase.
 
     0.593
Amuc_1793
PFAM: acyltransferase 3; KEGG: pdi:BDI_3314 acyltransferase.
  
     0.590
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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