STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0837Hypothetical protein; KEGG: rba:RB763 iduronate-2-sulfatase. (518 aa)    
Predicted Functional Partners:
Amuc_0006
KEGG: cyb:CYB_1660 lipoprotein, putative.
      
 0.602
Amuc_0371
KEGG: dol:Dole_0790 two component regulator propeller domain protein.
     
 0.602
Amuc_0789
Hypothetical protein; KEGG: dme:Dmel_CG8715 lingerer.
      
 0.602
Amuc_1333
KEGG: ddi:DDBDRAFT_0188625 hypothetical protein.
      
 0.602
Amuc_2165
KEGG: yli:YALI0F28281g hypothetical protein.
      
 0.602
Amuc_0576
PFAM: peptidase M16 domain protein; KEGG: mmr:Mmar10_2605 peptidase M16 domain protein.
   
  
 0.600
Amuc_1026
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
      
 0.600
Amuc_2108
PFAM: glycoside hydrolase family 16; KEGG: bfs:BF4139 putative endo-beta-galactosidase.
      
 0.504
nrdR
ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.412
Amuc_0839
Hypothetical protein.
       0.400
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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