STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0848PFAM: ComEC/Rec2-related protein; KEGG: swo:Swol_1595 DNA internalization-related competence protein ComEC/Rec2. (689 aa)    
Predicted Functional Partners:
Amuc_0443
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: swo:Swol_0839 Rossmann-fold nucleotide-binding protein involved in DNA uptake.
 
  
 0.824
Amuc_0569
KEGG: gsu:GSU0124 competence protein F, putative.
 
  
 0.814
Amuc_0788
Mg chelatase, subunit ChlI; KEGG: aba:Acid345_3233 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase.
 
  
 0.706
Amuc_0847
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_1091 metal dependent phosphohydrolase.
       0.603
Amuc_0430
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: sth:STH1643 competence-damage inducible protein; Belongs to the CinA family.
 
   
 0.502
Amuc_1516
Putative PAS/PAC sensor protein; KEGG: pth:PTH_2274 serine phosphatase RsbU; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein.
  
    0.477
Amuc_0846
PFAM: coagulation factor 5/8 type domain protein; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: fjo:Fjoh_2028 alpha-L-fucosidase.
       0.457
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
  
 0.432
Amuc_1584
PFAM: type II secretion system protein; KEGG: gme:Gmet_1395 type II secretion system protein.
   
  
 0.400
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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