STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0944KEGG: dvl:Dvul_2390 hypothetical protein. (399 aa)    
Predicted Functional Partners:
Amuc_0943
PFAM: glycosyl transferase family 2; KEGG: bfs:BF3815 putative LPS biosynthesis-related glycosyltransferase.
  
    0.784
Amuc_0942
PFAM: glycosyl transferase family 11; KEGG: tel:tll0994 alpha-1,2-fucosyltransferase.
       0.636
Amuc_0941
PFAM: glycosyl transferase family 2; KEGG: bwe:BcerKBAB4_3393 glycosyl transferase family 2.
  
    0.603
Amuc_0940
Hypothetical protein.
       0.564
Amuc_1751
PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: chu:CHU_1345 candidate glycogen branching enzyme, glycoside hydrolase family 13 protein.
   
 0.439
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.