STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0961PFAM: protein of unknown function DUF362; KEGG: pdi:BDI_0776 hypothetical protein. (282 aa)    
Predicted Functional Partners:
Amuc_0962
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pdi:BDI_0775 ferredoxin-type protein.
 
     0.915
Amuc_0770
PFAM: nitroreductase; KEGG: pol:Bpro_0930 nitroreductase.
  
     0.553
Amuc_0960
PFAM: putative rRNA methylase; KEGG: ppd:Ppro_0564 putative rRNA methylase.
       0.546
Amuc_0248
PFAM: nitroreductase; KEGG: pdi:BDI_3667 hypothetical protein.
  
     0.478
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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