STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0968KEGG: ade:Adeh_2766 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase. (458 aa)    
Predicted Functional Partners:
Amuc_1413
Capsular exopolysaccharide family; KEGG: noc:Noc_1497 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.936
Amuc_2078
Capsular exopolysaccharide family; KEGG: bth:BT_0061 putative tyrosine-protein kinase ptk; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.932
Amuc_0879
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: tel:tlr1434 probable UDP-N-acetyl-D-mannosaminuronic acid transferase; Belongs to the glycosyltransferase 26 family.
   
 0.899
Amuc_2079
PFAM: PHP domain protein; KEGG: pdi:BDI_3239 putative capsular polysaccharide biosythesis protein.
 
  
 0.652
Amuc_2077
PFAM: polysaccharide export protein; KEGG: pgi:PG0437 polysaccharide export protein, BexD/CtrA/VexA family.
 
  
 0.554
Amuc_2084
PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_3971 glycosyltransferase family 4.
 
  
 0.545
Amuc_0638
PFAM: glycosyl transferase group 1; KEGG: mem:Memar_0693 glycosyl transferase, group 1.
 
  
 0.536
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.532
Amuc_2090
PFAM: glycosyl transferase group 1; KEGG: bth:BT_1352 putative glycosyltransferase.
 
  
 0.526
Amuc_2083
PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_3927 glycosyltransferase family 4.
 
  
 0.513
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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