STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1016KEGG: plu:plu1400 hypothetical protein. (106 aa)    
Predicted Functional Partners:
Amuc_1017
KEGG: amr:AM1_4012 hypothetical protein.
       0.773
Amuc_1018
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: spe:Spro_4649 multiple antibiotic resistance (MarC)-related protein.
  
    0.740
Amuc_1019
Hypothetical protein.
       0.430
Amuc_1020
Hypothetical protein.
       0.430
Amuc_1634
KEGG: gfo:GFO_0205 conserved hypothetical protein, membrane.
  
     0.413
Amuc_1410
KEGG: bth:BT_2020 putative phosphate/sulphate permeases.
  
     0.410
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.