STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1110Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfu:Sfum_0707 two component transcriptional regulator, winged helix family. (234 aa)    
Predicted Functional Partners:
Amuc_1109
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mta:Moth_2494 multi-sensor signal transduction histidine kinase.
 0.998
Amuc_1727
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: hch:HCH_00947 signal transduction histidine kinase.
 
 
 0.882
Amuc_0311
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: sat:SYN_02215 signal transduction histidine kinase.
 
 
 0.847
Amuc_0858
PFAM: cyclic nucleotide-binding; ATP-binding region ATPase domain protein; KEGG: vfi:VF1053 sensory transduction protein kinase.
 
 
 0.561
Amuc_0827
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; KEGG: ade:Adeh_0892 osmosensitive K+ channel signal transduction histidine kinase.
 
 0.535
Amuc_1516
Putative PAS/PAC sensor protein; KEGG: pth:PTH_2274 serine phosphatase RsbU; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein.
 
 
 0.534
ilvD
KEGG: cha:CHAB381_1769 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
  
  
 0.489
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.