STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1132H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: cpf:CPF_2143 potassium uptake protein, TrkH family. (584 aa)    
Predicted Functional Partners:
Amuc_0807
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: chy:CHY_1574 potassium uptake protein KtrA.
 
 
 0.856
Amuc_0766
PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bfr:BF1447 putative transporter.
  
 
 0.559
Amuc_1131
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bth:BT_0588 BexA, multidrug efflux pump.
  
    0.490
Amuc_2003
PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: cac:CAC1317 potassium channel subunit.
 
 
 0.482
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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