STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1291KEGG: pdi:BDI_0623 putative surface layer protein, with cytochrome c domain. (620 aa)    
Predicted Functional Partners:
Amuc_1290
PFAM: protein of unknown function DUF323; KEGG: pdi:BDI_0626 hypothetical protein.
 
 
 0.999
Amuc_1874
PFAM: cytochrome c class I; KEGG: afw:Anae109_0844 hypothetical protein.
  
 
 0.958
Amuc_1292
PFAM: Endoribonuclease L-PSP; KEGG: pdi:BDI_2599 putative translation initiation inhibitor.
 
     0.785
Amuc_1876
Hypothetical protein; KEGG: gfo:GFO_1397 cbb3-type cytochrome c oxidase subunit II.
  
  
 0.684
Amuc_2065
PFAM: acyltransferase 3; KEGG: bvu:BVU_1181 hypothetical protein.
  
     0.674
Amuc_1932
PFAM: Endoribonuclease L-PSP; KEGG: acr:Acry_3477 endoribonuclease L-PSP.
 
     0.632
Amuc_1091
PFAM: Di-haem cytochrome c peroxidase; KEGG: bfs:BF2362 cytochrome-C peroxidase.
 
 
 0.624
Amuc_1793
PFAM: acyltransferase 3; KEGG: pdi:BDI_3314 acyltransferase.
 
     0.569
Amuc_0773
PFAM: acyltransferase 3; KEGG: fjo:Fjoh_3387 acyltransferase 3.
 
     0.563
Amuc_0962
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pdi:BDI_0775 ferredoxin-type protein.
  
 
 0.562
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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