STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1309PFAM: Aldose 1-epimerase; KEGG: ssc:399536 galactose mutarotase. (319 aa)    
Predicted Functional Partners:
Amuc_0969
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: cme:CMN198C galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 0.991
Amuc_1667
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bfr:BF1884 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.931
Amuc_0824
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bth:BT_4050 beta-galactosidase.
 
 
 0.925
Amuc_1125
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: chu:CHU_2411 UDP-glucose 4-epimerase (UDP-galactose-4-epimerase).
 
  
 0.925
Amuc_1666
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bth:BT_3293 beta-galactosidase.
 
 
 0.925
Amuc_0290
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: xcv:XCV4356 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.924
Amuc_0097
PFAM: ROK family protein; KEGG: ter:Tery_2875 ROK domain containing protein.
 
  
 0.920
Amuc_0539
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bfs:BF1672 putative beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.919
Amuc_1094
PFAM: ROK family protein; KEGG: tel:tlr2355 glucokinase.
 
  
 0.919
Amuc_0771
Beta-galactosidase; PFAM: glycoside hydrolase family 35; KEGG: bvi:Bcep1808_1284 beta-galactosidase.
  
 
 0.909
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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