STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1381PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related. (587 aa)    
Predicted Functional Partners:
Amuc_1379
PFAM: ABC-2 type transporter; KEGG: rpc:RPC_3040 ABC-2.
  
 0.997
Amuc_1380
PFAM: ABC-2 type transporter; KEGG: rpc:RPC_3039 ABC-2.
  
 0.997
Amuc_1382
PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_2390 secretion protein HlyD family protein.
  
 0.964
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.531
Amuc_1384
TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pst:PSPTO_0984 CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.463
Amuc_0143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce3459 oligopeptide transport permease protein.
    
 0.458
Amuc_0144
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_3000 binding-protein-dependent transport systems inner membrane component.
     
 0.447
Amuc_1306
TIGRFAM: phosphate binding protein; KEGG: ppd:Ppro_3157 phosphate binding protein.
      
 0.446
Amuc_0021
TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: ent:Ent638_3638 RNA polymerase factor sigma-54.
     
 0.445
Amuc_0828
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hau:Haur_2274 two component transcriptional regulator, winged helix family.
      
 0.445
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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