STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zupTZinc/iron permease; Mediates zinc uptake. May also transport other divalent cations; Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily. (270 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
     
 0.638
Amuc_1484
Hypothetical protein; KEGG: cfe:CF0173 thioredoxin/thiol-disulfide isomerase.
       0.618
rnr
VacB and RNase II family 3'-5' exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
     
 0.603
Amuc_1485
KEGG: tet:TTHERM_00196470 hypothetical protein Pfam: Spectrin SURF6 PROSITE: GLN_RICH LYS_RICH.
       0.601
Amuc_1486
Hypothetical protein.
       0.561
Amuc_1482
PFAM: protein of unknown function DUF805; KEGG: cmi:CMM_0392 hypothetical protein.
       0.537
Amuc_1592
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.443
Amuc_1176
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: bfr:BF3097 putative sugar nucleotide epimerase.
  
    0.439
Amuc_0538
Hypothetical protein; KEGG: afw:Anae109_1352 DoxX family protein.
   
 0.408
Amuc_1487
PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_1771 valine--pyruvate transaminase.
       0.406
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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