STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1584PFAM: type II secretion system protein; KEGG: gme:Gmet_1395 type II secretion system protein. (422 aa)    
Predicted Functional Partners:
Amuc_1585
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rba:RB12774 type IV fimbrial assembly protein PilB.
 
 0.982
Amuc_1586
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rba:RB12768 type IV fimbrial assembly protein PilB.
 
 0.979
Amuc_1503
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: mxa:MXAN_5779 prepilin peptidase.
 
  
 0.875
Amuc_1583
Hypothetical protein; KEGG: gme:Gmet_1399 N-terminal methylation.
  
  
 0.875
Amuc_1101
PFAM: cell division protein FtsA; KEGG: mxa:MXAN_5776 type IV pilus biogenesis protein PilM.
 
 
 
 0.821
Amuc_0165
Twitching motility protein; KEGG: chy:CHY_0631 type IV pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
  
 0.803
Amuc_0166
Twitching motility protein; KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
 0.803
Amuc_0745
Hypothetical protein; KEGG: fma:FMG_0555 type IV pilin PilA homolog.
 
  
 0.705
Amuc_1100
KEGG: twh:TWT151 hypothetical protein.
      
 0.606
Amuc_0394
Hypothetical protein; KEGG: syn:slr1456 type 4 prepilin-like protein.
  
  
 0.556
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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