STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1755PFAM: sulfatase; KEGG: pdi:BDI_1189 putative secreted sulfatase precursor. (562 aa)    
Predicted Functional Partners:
Amuc_1290
PFAM: protein of unknown function DUF323; KEGG: pdi:BDI_0626 hypothetical protein.
 
   0.685
Amuc_0993
PFAM: protein of unknown function DUF323; KEGG: rba:RB11811 hypothetical protein.
 
   0.562
Amuc_1008
PFAM: glycoside hydrolase family 31; coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; KEGG: bfs:BF1059 putative glycosyl hydrolase.
  
 
 
 0.555
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
       0.519
Amuc_1835
Exo-alpha-sialidase; KEGG: pdi:BDI_2946 glycoside hydrolase family 33, candidate sialidase.
  
 
   0.518
Amuc_1756
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
       0.493
Amuc_0379
KEGG: sun:SUN_2394 hypothetical protein; TIGRFAM: cytochrome C family protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
 
  0.485
Amuc_0824
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bth:BT_4050 beta-galactosidase.
  
 
 0.485
Amuc_1155
PFAM: protein of unknown function DUF323; KEGG: hau:Haur_1634 protein of unknown function DUF323.
 
   0.476
Amuc_1753
PFAM: Fe-S metabolism associated SufE; KEGG: gfo:GFO_3127 protein containing Fe-S metabolism associated domain.
       0.456
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.