STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1805PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bfs:BF2126 putative flavoredoxin. (153 aa)    
Predicted Functional Partners:
Amuc_1808
PFAM: amidohydrolase 2; KEGG: bfs:BF2135 putative amidohydrolase.
      0.932
Amuc_1806
PFAM: Carboxymuconolactone decarboxylase; KEGG: bfr:BF1907 hypothetical protein.
 
  
 0.896
Amuc_1804
KEGG: tpd:Teth39_1595 hypothetical protein.
 
     0.854
Amuc_1007
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bth:BT_0729 transcriptional regulator.
 
   
 0.753
Amuc_1131
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bth:BT_0588 BexA, multidrug efflux pump.
  
     0.627
Amuc_0106
PFAM: beta-lactamase; KEGG: cak:Caul_0571 beta-lactamase.
      
 0.605
Amuc_0183
PFAM: beta-lactamase; KEGG: aby:ABAYE3623 extended spectrum beta-lactamase VEB-1.
      
 0.604
Amuc_1953
KEGG: cth:Cthe_0219 5-nitroimidazole antibiotic resistance protein.
      
 0.604
Amuc_1002
PFAM: Carboxymuconolactone decarboxylase; KEGG: gur:Gura_4370 cupin 2, conserved barrel domain protein.
 
    0.598
Amuc_1803
PFAM: metallophosphoesterase; KEGG: mrd:Mrad2831_5967 metallophosphoesterase.
       0.429
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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