STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1967PFAM: Thioredoxin domain; KEGG: ath:AT1G76760 ATY1 (Arabidopsis thioredoxin y1); thiol-disulfide exchange intermediate. (169 aa)    
Predicted Functional Partners:
Amuc_1269
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: bba:Bd0373 hypothetical protein.
  
 
 0.918
Amuc_1968
TIGRFAM: conserved hypothetical integral membrane protein; PFAM: conserved hypothetical protein; KEGG: bld:BLi04068 YwaF.
       0.544
Amuc_1966
Hypothetical protein.
       0.507
Amuc_1067
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_5272 transcriptional regulator, ArsR family.
  
 
 0.451
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 
 0.447
Amuc_0343
KEGG: sru:SRU_2711 thiol:disulfide interchange protein DsbD, putative.
   
 
 0.445
Amuc_2066
PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase_; KEGG: pcu:pc0033 putative bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase); Belongs to the aldehyde dehydrogenase family.
   
 
 0.427
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.426
Amuc_1689
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: gfo:GFO_1865 dihydrolipoamide dehydrogenase.
  
 
 0.424
Amuc_0799
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: mar:MAE_38140 pyruvate-flavodoxin oxidoreductase.
     
 0.422
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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