STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_2001KEGG: bfs:BF2939 putative lipoprotein. (679 aa)    
Predicted Functional Partners:
Amuc_1008
PFAM: glycoside hydrolase family 31; coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; KEGG: bfs:BF1059 putative glycosyl hydrolase.
  
     0.699
Amuc_1835
Exo-alpha-sialidase; KEGG: pdi:BDI_2946 glycoside hydrolase family 33, candidate sialidase.
  
     0.649
Amuc_1603
KEGG: rba:RB8479 hypothetical protein-signal peptide and transmembrane prediction.
 
     0.641
Amuc_1425
PFAM: Kelch repeat-containing protein; KEGG: rba:RB3349 conserved hypothetical protein-putative sodium:solute symporter.
  
     0.635
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
       0.570
Amuc_1947
PFAM: N-acylglucosamine 2-epimerase; KEGG: rba:RB3348 N-acylglucosamine 2-epimerase.
  
     0.564
Amuc_1424
Major facilitator superfamily MFS_1; PFAM: Kelch repeat-containing protein; Kelch repeat protein; major facilitator superfamily MFS_1; KEGG: pdi:BDI_2943 major facilitator family transporter.
  
     0.540
Amuc_0502
KEGG: pdi:BDI_1341 putative transmembrane protein.
  
     0.521
Amuc_0803
PFAM: coagulation factor 5/8 type domain protein; KEGG: pdi:BDI_2427 hypothetical protein.
  
    0.506
Amuc_0625
Exo-alpha-sialidase; KEGG: rba:RB3353 sialidase [precursor].
  
     0.496
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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