STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_2003PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: cac:CAC1317 potassium channel subunit. (269 aa)    
Predicted Functional Partners:
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
     
 0.516
Amuc_1132
H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: cpf:CPF_2143 potassium uptake protein, TrkH family.
 
 
 0.482
Amuc_0806
H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: gfo:GFO_2532 V-type sodium ATP synthase subunit J.
 
 
 0.480
Amuc_0799
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: mar:MAE_38140 pyruvate-flavodoxin oxidoreductase.
  
 
 0.454
Amuc_0896
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: hmo:HM1_1966 uroporphyrinogen III synthase/methyltransferase.
  
    0.424
Amuc_2000
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_1260 cyanate MFS transporter.
 
    0.407
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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