STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_2079PFAM: PHP domain protein; KEGG: pdi:BDI_3239 putative capsular polysaccharide biosythesis protein. (223 aa)    
Predicted Functional Partners:
Amuc_2078
Capsular exopolysaccharide family; KEGG: bth:BT_0061 putative tyrosine-protein kinase ptk; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.947
Amuc_0736
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mar:MAE_00280 low molecular weight phosphotyrosine protein phosphatase.
     
 0.901
Amuc_1697
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: tte:TTE0146 ribose 5-phosphate isomerase RpiB.
     
 0.901
Amuc_2080
PFAM: sugar transferase; KEGG: gfo:GFO_1988 exopolysaccharide production related sugar transferase.
 
  
 0.877
Amuc_1413
Capsular exopolysaccharide family; KEGG: noc:Noc_1497 protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.873
Amuc_2077
PFAM: polysaccharide export protein; KEGG: pgi:PG0437 polysaccharide export protein, BexD/CtrA/VexA family.
 
     0.703
Amuc_0968
KEGG: ade:Adeh_2766 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.652
Amuc_2083
PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_3927 glycosyltransferase family 4.
 
  
 0.589
Amuc_2081
PFAM: glycosyl transferase family 2; KEGG: bfr:BF3648 putative glycosyltransferase.
     
 0.583
Amuc_2084
PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_3971 glycosyltransferase family 4.
 
  
 0.503
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.