STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mflv_2016PFAM: protein of unknown function UPF0016; KEGG: rha:RHA1_ro04005 possible membrane protein. (256 aa)    
Predicted Functional Partners:
Mflv_3042
KEGG: mmc:Mmcs_3159 hypothetical protein.
      
 0.537
Mflv_2015
PFAM: Acetamidase/Formamidase; KEGG: mmc:Mmcs_2379 acetamidase/formamidase.
 
     0.465
Mflv_0956
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA4146 cation transport ATPases.
 
 
 
 0.442
Mflv_3452
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: mbo:Mb1944c ferric uptake regulation protein FurA (fur); Belongs to the Fur family.
     
 0.436
Mflv_4058
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: mmc:Mmcs_2063 cobalamin (vitamin B12) biosynthesis CbiM protein.
  
     0.404
Your Current Organism:
Mycolicibacterium gilvum
NCBI taxonomy Id: 350054
Other names: M. gilvum PYR-GCK, Mycobacterium flavescens ATCC 700033, Mycobacterium flavescens PYR-GCK, Mycobacterium gilvum PYR-GCK, Mycolicibacterium gilvum PYR-GCK
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