node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mflv_5230 | rplA | Mflv_5230 | Mflv_5115 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.560 |
Mflv_5230 | rplO | Mflv_5230 | Mflv_5028 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.556 |
Mflv_5230 | rpmE | Mflv_5230 | Mflv_2306 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.586 |
Mflv_5230 | rpoA | Mflv_5230 | Mflv_4970 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.570 |
Mflv_5230 | rpoB | Mflv_5230 | Mflv_5097 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.579 |
Mflv_5230 | rpoZ | Mflv_5230 | Mflv_3739 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.579 |
Mflv_5230 | rpsB | Mflv_5230 | Mflv_4133 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | PFAM: ribosomal protein S2; KEGG: mmc:Mmcs_1993 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.559 |
Mflv_5230 | rpsL | Mflv_5230 | Mflv_5078 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.578 |
Mflv_5230 | rpsO | Mflv_5230 | Mflv_4024 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.571 |
Mflv_5230 | tuf | Mflv_5230 | Mflv_5075 | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.585 |
rplA | Mflv_5230 | Mflv_5115 | Mflv_5230 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mpa:MAP0669 cold shock protein. | 0.560 |
rplA | rplO | Mflv_5115 | Mflv_5028 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.995 |
rplA | rpmE | Mflv_5115 | Mflv_2306 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.981 |
rplA | rpoA | Mflv_5115 | Mflv_4970 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.933 |
rplA | rpoB | Mflv_5115 | Mflv_5097 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.946 |
rplA | rpoZ | Mflv_5115 | Mflv_3739 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.703 |
rplA | rpsB | Mflv_5115 | Mflv_4133 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | PFAM: ribosomal protein S2; KEGG: mmc:Mmcs_1993 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
rplA | rpsL | Mflv_5115 | Mflv_5078 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.987 |
rplA | rpsO | Mflv_5115 | Mflv_4024 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.989 |
rplA | tuf | Mflv_5115 | Mflv_5075 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.989 |