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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0100KEGG: mmc:Mmcs_0085 membrane protein-like protein. (715 aa)    
Predicted Functional Partners:
Mvan_0102
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0086 transcriptional regulator, TetR family.
  
    0.788
Mvan_0101
KEGG: rha:RHA1_ro00767 hypothetical protein.
       0.781
Mvan_3048
PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: mmc:Mmcs_2762 membrane protein-like protein.
  
     0.761
Mvan_2332
KEGG: afm:Afu6g14570 hypothetical protein.
 
   
 0.741
Mvan_1256
KEGG: mxa:MXAN_2257 FHA domain protein.
  
     0.729
Mvan_5919
Kumamolisin, Serine peptidase, MEROPS family S53; KEGG: bpm:BURPS1710b_A0608 kumamolisin.
  
     0.703
Mvan_2737
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: mmc:Mmcs_2440 SUF system FeS assembly protein.
   
    0.696
Mvan_4077
PFAM: peptidase S15; KEGG: sma:SAV5344 putative ABC transporter ATP-binding protein.
  
     0.655
Mvan_0103
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0087 transcriptional regulator, TetR family.
 
    0.640
Mvan_2015
PFAM: regulatory protein, TetR; KEGG: sma:SAV431 TetR-family transcriptional regulator.
 
    0.639
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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