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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0200KEGG: mbo:Mb0216 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Mvan_0199
KEGG: mmc:Mmcs_0174 hypothetical protein.
  
    0.901
Mvan_4067
KEGG: mmc:Mmcs_3612 hypothetical protein.
  
     0.760
Mvan_0270
PFAM: condensation domain protein; KEGG: mmc:Mmcs_0245 PapA3_1.
  
     0.736
Mvan_5469
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_4874 methyltransferase type 12.
 
     0.712
Mvan_0775
KEGG: mbo:Mb2706c probable antibiotic-transport integral membrane leucine and valine rich protein ABC transporter.
  
     0.707
Mvan_0774
Fluoroquinolone transport system permease protein; KEGG: mmc:Mmcs_2204 putative antibiotic-transport integral membrane leucine and alanine and valine rich protein ABC transporter.
  
     0.704
Mvan_0734
KEGG: mmc:Mmcs_0571 putative tuberculin related peptide.
  
     0.656
Mvan_1509
KEGG: mmc:Mmcs_1165 hypothetical protein.
 
     0.655
Mvan_0620
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_0443 transcriptional regulator, LuxR family.
  
     0.653
Mvan_0091
KEGG: mmc:Mmcs_0077 putative conserved membrane protein.
  
     0.636
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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