Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mvan_0280KEGG: mmc:Mmcs_0251 hypothetical protein. (53 aa)    
Predicted Functional Partners:
Mvan_0281
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa40720 putative acyl-coA dehydrogenase.
       0.548
Mvan_0288
KEGG: mmc:Mmcs_0255 hypothetical protein.
     
 0.541
Mvan_0283
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: mmc:Mmcs_0252 succinate dehydrogenase and fumarate reductase iron-sulfur protein.
     
 0.481
Mvan_0284
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: mmc:Mmcs_0253 succinate dehydrogenase.
       0.417
Mvan_0282
KEGG: mtc:MT1786 hypothetical protein.
       0.416
Mvan_1589
PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mmc:Mmcs_1230 succinate dehydrogenase, cytochrome b subunit.
      
 0.401
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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