STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0294Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rso:RSc1078 probable transcriptional regulatory DNA-binding transcription regulator protein. (236 aa)    
Predicted Functional Partners:
Mvan_3051
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rxy:Rxyl_1028 transcriptional regulator, GntR family.
 
  
 0.749
Mvan_1978
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_1760 transcriptional regulator, GntR family.
 
  
 0.701
Mvan_1986
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mpa:MAP2347 hypothetical protein.
  
     0.672
Mvan_3927
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: mmc:Mmcs_3531 transcriptional regulator, GntR family.
 
  
 0.668
Mvan_0931
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_4868 transcriptional regulator, GntR family.
 
  
 0.666
Mvan_1575
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mmc:Mmcs_1223 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
   
 
 0.649
Mvan_4965
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: mmc:Mmcs_4409 transcriptional regulator, GntR family.
 
  
 0.647
Mvan_5874
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; Helix-turn-helix, type 11 domain protein; KEGG: bld:BLi04350 similar to transcriptional regulator (GntR family); RBL01565.
 
  
 0.622
Mvan_0130
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_0114 transcriptional regulator, GntR family.
 
  
 0.598
Mvan_0462
Transcriptional regulator PhtR; PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1621 transcriptional regulator, IclR family.
 
  
 0.598
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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