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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0475KEGG: mmc:Mmcs_2599 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Mvan_0474
PFAM: phage integrase family protein; KEGG: nfa:pnf2830 putative recombinase.
 
   
 0.948
Mvan_0476
PFAM: phage integrase family protein; KEGG: rha:RHA1_ro08303 hypothetical protein; Belongs to the 'phage' integrase family.
 
   
 0.926
Mvan_5941
PFAM: phage integrase family protein; KEGG: rha:RHA1_ro08303 hypothetical protein.
 
   
 0.791
Mvan_5943
PFAM: phage integrase family protein; KEGG: nfa:pnf2830 putative recombinase.
 
   
 0.782
Mvan_3398
KEGG: mpa:MAP4311c hypothetical protein.
  
     0.621
Mvan_3734
KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein.
 
   
 0.606
Mvan_3254
KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein.
 
   
 0.600
Mvan_1114
PFAM: phage integrase family protein; KEGG: ser:SERP2507 transposase B.
 
   
 0.522
Mvan_0479
PFAM: phage integrase family protein; KEGG: mmc:Mmcs_5578 phage integrase.
 
   
 0.486
Mvan_3897
PFAM: phage integrase family protein; KEGG: mmc:Mmcs_5578 phage integrase.
 
   
 0.486
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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