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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0798PFAM: Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_0633 carboxymuconolactone decarboxylase. (180 aa)    
Predicted Functional Partners:
Mvan_0799
PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: mmc:Mmcs_0634 transcriptional regulator, XRE family.
       0.866
Mvan_0800
PFAM: acyl-ACP thioesterase; KEGG: mmc:Mmcs_0635 acyl-ACP thioesterase.
 
     0.668
Mvan_0797
PFAM: alpha/beta hydrolase fold; KEGG: mmc:Mmcs_0801 alpha/beta hydrolase fold.
  
    0.612
Mvan_0563
TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; KEGG: mmc:Mmcs_1701 4-carboxymuconolactone decarboxylase.
  
 
 0.558
Mvan_0562
3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: mmc:Mmcs_1700 fumarate lyase.
     
 0.527
Mvan_5032
KEGG: mmc:Mmcs_4463 hypothetical protein.
  
   
 0.515
Mvan_1745
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_1335 transcriptional regulator, TetR family.
 
     0.494
Mvan_3491
Sulfite reductase (NADPH) alpha subunit; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: mmc:Mmcs_3229 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.439
Mvan_0854
KEGG: mmc:Mmcs_0685 hypothetical protein.
  
     0.438
Mvan_0249
KEGG: mmc:Mmcs_0220 hypothetical protein.
  
     0.431
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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