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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0806PFAM: protein of unknown function DUF445; KEGG: mmc:Mmcs_0641 protein of unknown function DUF445. (447 aa)    
Predicted Functional Partners:
Mvan_0807
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mmc:Mmcs_0642 transcriptional regulator, XRE family.
       0.651
Mvan_0808
KEGG: mmc:Mmcs_0643 hypothetical protein.
       0.651
Mvan_0809
KEGG: mle:ML2453 conserved membrane protein.
 
     0.649
Mvan_0805
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; Resolvase helix-turn-helix domain protein; KEGG: mmc:Mmcs_0640 transcriptional regulator, TetR family.
  
    0.601
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.562
Mvan_0804
PFAM: protein of unknown function DUF344; KEGG: mmc:Mmcs_0639 protein of unknown function DUF344.
 
     0.501
Mvan_0810
KEGG: mmc:Mmcs_0645 hypothetical protein.
       0.456
Mvan_1574
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: amino acid transporter, putative; TC 2.A.3.
 
     0.410
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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