STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0809KEGG: mle:ML2453 conserved membrane protein. (93 aa)    
Predicted Functional Partners:
Mvan_0810
KEGG: mmc:Mmcs_0645 hypothetical protein.
       0.875
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.875
Mvan_0808
KEGG: mmc:Mmcs_0643 hypothetical protein.
 
     0.741
Mvan_0807
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mmc:Mmcs_0642 transcriptional regulator, XRE family.
       0.675
Mvan_0805
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; Resolvase helix-turn-helix domain protein; KEGG: mmc:Mmcs_0640 transcriptional regulator, TetR family.
 
     0.673
Mvan_0806
PFAM: protein of unknown function DUF445; KEGG: mmc:Mmcs_0641 protein of unknown function DUF445.
 
     0.635
Mvan_3351
PFAM: protein of unknown function DUF402; KEGG: mbo:Mb1658c hypothetical protein.
  
     0.540
Mvan_1712
PFAM: GtrA family protein; KEGG: mmc:Mmcs_1297 GtrA-like protein.
  
     0.474
Mvan_2430
KEGG: mmc:Mmcs_2158 putative conserved transmembrane protein.
  
     0.452
Mvan_0828
KEGG: mpa:MAP3980 hypothetical protein.
 
     0.438
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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