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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0840PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: mmc:Mmcs_0671 NAD-dependent epimerase/dehydratase. (368 aa)    
Predicted Functional Partners:
Mvan_5650
PFAM: UDP-galactopyranose mutase; KEGG: mmc:Mmcs_5020 UDP-galactopyranose mutase.
  
 
 0.965
Mvan_0598
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: mpa:MAP3825 UDP-glucose 6-dehydrogenase.
  
 0.945
Mvan_5389
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mmc:Mmcs_4789 UDP-glucose 4-epimerase.
  
 0.922
Mvan_0841
PFAM: phospholipid/glycerol acyltransferase; KEGG: mmc:Mmcs_0672 phospholipid/glycerol acyltransferase.
 
  
 0.921
Mvan_4833
UDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase; KEGG: mmc:Mmcs_4290 nucleotidyl transferase.
  
 
 0.911
Mvan_4227
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: mmc:Mmcs_3760 NAD-dependent epimerase/dehydratase.
     
  0.900
Mvan_5143
UDP-sulfoquinovose synthase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: mmc:Mmcs_4564 UDP-sulfoquinovose synthase.
     
  0.900
Mvan_5808
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mmc:Mmcs_4503 NAD-dependent epimerase/dehydratase.
     
 
0.900
Mvan_0839
PFAM: Protein of unknown function DUF1713; KEGG: cdi:DIP0396 hypothetical protein.
       0.807
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.740
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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