STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0890KEGG: fra:Francci3_0982 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Mvan_0889
PFAM: oxidoreductase, molybdopterin binding; KEGG: fra:Francci3_0983 oxidoreductase, molybdopterin binding.
 
     0.954
Mvan_0888
PFAM: Methyltransferase type 12; KEGG: mmc:Mmcs_0712 methyltransferase type 12.
 
     0.953
Mvan_0887
KEGG: mmc:Mmcs_0711 hypothetical protein.
 
     0.928
Mvan_0886
PFAM: glycosyl transferase, family 2; KEGG: mmc:Mmcs_0710 glycosyl transferase, family 2.
 
     0.905
Mvan_0884
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mmc:Mmcs_0708 periplasmic sensor signal transduction histidine kinase.
 
     0.821
Mvan_0891
KEGG: mmc:Mmcs_0715 putative conserved integral membrane protein.
 
     0.688
Mvan_0885
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mmc:Mmcs_0709 two component transcriptional regulator, winged helix family.
 
     0.656
Mvan_2494
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: fra:Francci3_4252 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
     0.624
Mvan_1709
KEGG: plt:Plut_1877 hypothetical protein.
  
     0.597
Mvan_0882
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: mmc:Mmcs_0704 NAD-dependent epimerase/dehydratase.
 
     0.578
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.