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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_0933PFAM: Asp/Glu racemase; KEGG: bxe:Bxe_A1925 putative hydantoin racemase. (234 aa)    
Predicted Functional Partners:
Mvan_0932
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: mmc:Mmcs_4869 permease for cytosine/purines, uracil, thiamine, allantoin.
 
     0.954
Mvan_3151
PFAM: polysaccharide deacetylase; KEGG: bbr:BB0695 putative polysaccharide deacetylase.
 
  
  0.952
Mvan_3154
PFAM: polysaccharide deacetylase; KEGG: bbr:BB1148 hypothetical protein.
 
  
  0.952
Mvan_5276
KEGG: nfa:nfa52440 hypothetical protein.
 
  
  0.917
Mvan_5382
KEGG: mmc:Mmcs_4780 hypothetical protein.
    
  0.904
Mvan_0931
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mmc:Mmcs_4868 transcriptional regulator, GntR family.
 
     0.728
Mvan_0934
PFAM: polysaccharide deacetylase; KEGG: nfa:nfa52360 hypothetical protein.
 
     0.570
Mvan_0047
PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_5282 polysaccharide deacetylase.
 
     0.458
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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