Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Mvan_0940KEGG: mmc:Mmcs_0729 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Mvan_0939
PFAM: phosphate transporter; KEGG: mmc:Mmcs_0728 phosphate transporter.
  
    0.814
Mvan_0941
KEGG: mmc:Mmcs_0730 hypothetical protein.
       0.776
Mvan_0938
KEGG: mbo:Mb0557c hypothetical protein.
       0.505
Mvan_0937
PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_0726 AMP-dependent synthetase and ligase.
       0.454
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
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