Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mvan_1027Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rha:RHA1_ro03793 probable transcriptional regulator, LysR family. (299 aa)    
Predicted Functional Partners:
Mvan_1029
PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: ani:AN0613.2 hypothetical protein.
 
   
 0.791
Mvan_1030
PFAM: dihydrodipicolinate synthetase; KEGG: tfu:Tfu_1718 putative dihydrodipicolinate synthase; Belongs to the DapA family.
 
  
 0.786
Mvan_1028
KEGG: mmc:Mmcs_0797 hypothetical protein.
       0.773
Mvan_1031
PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_4783 aldehyde dehydrogenase.
 
   
 0.709
Mvan_1032
PFAM: helix-turn-helix, HxlR type; KEGG: sma:SAV520 transcriptional regulator.
  
  
 0.563
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.489
Mvan_1017
D-glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: nfa:nfa35070 putative glucarate dehydratase.
 
   
 0.487
Mvan_5435
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: mmc:Mmcs_4818 transcriptional regulator, Crp/Fnr family.
  
 
 0.454
Mvan_3401
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: tfu:Tfu_1423 putative transcriptional regulator.
  
     0.436
Mvan_2347
PFAM: iron dependent repressor; FeoA family protein; KEGG: mmc:Mmcs_2097 iron (metal) dependent repressor, DtxR family.
  
 
 0.421
Your Current Organism:
Mycolicibacterium vanbaalenii
NCBI taxonomy Id: 350058
Other names: M. vanbaalenii PYR-1, Mycobacterium sp. PYR-1, Mycobacterium vanbaalenii DSM 7251, Mycobacterium vanbaalenii PYR-1, Mycolicibacterium vanbaalenii DSM 7251, Mycolicibacterium vanbaalenii PYR-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.